Genus¶

class turbustat.statistics.Genus(img, lowdens_thresh=0, highdens_thresh=100, numpts=100, smoothing_radii=None, save_name=None)[source] [edit on github]¶

Bases: object

Genus Statistics based off of Chepurnov et al. (2008).

Parameters:	img - numpy.ndarray 2D image. lowdens_thresh : float, optional Lower threshold of the data to use. highdens_thresh : float, optional Upper threshold of the data to use. numpts : int, optional Number of thresholds to calculate statistic at. smoothing_radii : list, optional Kernel radii to smooth data to. save_name : str, optional Object or region name. Used when plotting.

Methods Summary

Methods Documentation

make_genus_curve()[source] [edit on github]¶

Create the genus curve.

make_smooth_arrays()[source] [edit on github]¶

Smooth data using a Gaussian kernel.

run(verbose=False)[source] [edit on github]¶

Run the whole statistic.

Parameters:	verbose : bool, optional Enables plotting.